MassAI Tools

MassAI is a bioinformatics tool for analysing datasets from tandem mass spectrometry. The most common file formats are
MGF, MGX and MZXML.

From simple to complex samples, protein to proteome
- MassAI identifies proteins, peptides and PTMs in your datasets.

MassAI also handles non-standard modifications.
These include:
cross-linking, both natural (as in S-S bridges, Q-K transamination)
or chemically induced (as with BS3/BS2G) ,
glycomics and HDX; ideal if you want to investigate protein structure, interaction or dynamics.

MassAI is flexible when reporting your search results
From a broad overview of results, you can zoom in on each protein, peptide, scan or PTM.
All is annotated in detail, and presented in formats that are easy to include into to your report, paper or presentation.

Last but not least. MassAI is kept alive and free, through the kind sponsorships of:

SDU - University of Southern Denmark, Odense
SSI - Statens Serum Institute, Copenhagen
LU - Lund University, Sweden.
KU - University of Copenhagen.
DTU - the Danish Technical University

If you use MassAI, do send these sponsors a warm "thank you" thought.