Analytical Software for Mass Spectrometry

Comparative analysis of type 1 and type Z protein phosphatases reveals D615 as a key residue for Ppz1 regulation.
Antonio Casamayor, Diego Velázquez, Carlos Santolaria, Marcel Albacar, Morten I. Rasmussen, Peter Højrup, and
Joaquin Ariño;
2022, Int. J. Mol. Sci. 22.

Structural Analysis of Dimeric Calreticulin Using Stable Isotope Labelling, Cross-linking, Mass Spectrometry and Modelling.
Boelt,S. Rasmussen, M.I. Højrup, P.
2021, Journal of Proteomics.

Immunoglobulin G structure and rheumatoid factor epitopes.
Maibom-Thomsen, S. L., Trier, N. H., Holm, B. E., Hansen, K. B., Rasmussen, M. I., Chailyan, A., Marcatili, P., Højrup, P.
Houen, G.
2019: PLOS ONE. 14, 6, 28.

Structural modelling of the DNAJB6 oligomeric chaperone shows a peptide-binding cleft lined with conserved S/T-residues
at the dimer interface
Söderberg, C. A. G., Månsson, C., Bernfur, K., Rutsdottir, G., Härmark, J., Rajan, S., Al-Karadaghi, S., Rasmussen, MI.,
Höjrup, P., Hebert, H. & Emanuelsson, C.
2018. Scientific Reports. 8, 15 s., 5199.

Chaperone-client interactions between Hsp21 and client proteins monitored in solution by small angle X-ray scattering and captured
by crosslinking mass spectrometry
Rutsdottir, G., I Rasmussen, MI., Hojrup, P., Bernfur, K., Emanuelsson, C. & Söderberg, C. A. G.
2018. Proteins. 86, 1, s. 110-123.

Structural model of dodecameric heat-shock protein Hsp21: Flexible N-terminal arms interact with client proteins while C-terminal
tails maintain the dodecamer and chaperone activity.
Rutsdottir, G., Härmark, J., Weide, Y., Hebert, H., Rasmussen, MI., Wernersson, S., Respondek, M., Akke, M., Højrup, P.
, Koeck, P. J. B., Söderberg, C. A. G. & Emanuelsson, C.
2017, I : Journal of Biological Chemistry. 292, 19, s. 8103-8121

Iron-induced oligomerization of human FXN81-210 and bacterial CyaY frataxin and the effect of iron chelators.
Ahlgren, E. C., Fekry, M., Wiemann, M., Söderberg, C. A., Bernfur, K., Gakh, O., Rasmussen, MI., Højrup, P.,
Emanuelsson, C., Isaya, G. & Al-Karadaghi, S.
2017, I : PLOS ONE. 12, 12, 25 s., e0188937.

Mapping the Ca2+ induced structural change in calreticulin.
Boelt, S. G., Norn, C., Rasmussen, MI., André, I., Ciplys, E., Slibinskas, R., Houen, G. & Højrup, P.
2016, I : Journal of Proteomics. 142, s. 138-148

Exploring Structure and Interacxtions of the Bacterial Adaptor Protein YjbH by crosslinking mass spectrometry.
Al-Eryani, Y., Rasmussen, MI., Kjellström, S., Højrup, P., Emanuelsson, C. & von Wachenfeldt, C.
2016; Proteins. 84, 9, s. 1234-1245

Site-specific glycosylation of donkey milk lactoferrin investigated by high-resolution mass spectrometry.
Gallina S, Saletti R, Cunsolo V, Muccilli V, Foti S, Roepstorff P, Rasmussen MI.
2016; Amino Acids. Dec;48(12):2799-2808.

Automated N-glycan profiling of a mutant Trypanosoma rangeli sialidase expressed in Pichia pastoris, using tandem
mass spectrometry and bioinformatics. Haiying Li, Morten I. Rasmussen, Martin R. Larsen, Yao Guo, Carsten Jers,
Giuseppe Palmisano, Jørn D. Mikkelsen, Finn Kirpekar;
2015 Glycobiology. Dec;25(12):1350-61

Probing the structure of human protein disulfide isomerase by chemical cross-linking combined with mass spectrometry.
Peng L, Rasmussen MI, Chailyan A, Houen G, Højrup P.
2014 ; J Proteomics. Aug 28;108:1-16.

Impact of Selected Coagulants and Starters on Primary Proteolysis and Amino Acid Release Related to Bitterness and
Structure of Reduced-fat Cheddar Cheese.
Børsting MW, Qvist KB, Rasmussen MI, Vindeløv J, Vogensen FK, Ardö Y.
2012. Dairy Science and Technology; vol 92, no. 5, pp. 593-612.

CrossWork: software-assisted identification of cross-linked peptides.
Rasmussen MI, Refsgaard JC, Peng L, Houen G, Højrup P. J Proteomics.
2011 Sep 6;74(10):1871-83.

Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry.
Chen ZA, Jawhari A, Fischer L, Buchen C, Tahir S, Kamenski T, Rasmussen M,
Lariviere L, Bukowski-Wills JC, Nilges M, Cramer P, Rappsilber J. EMBO J.
2010 Feb 17;29(4):717-26.

Crossworks for Glycans, a New Program for Searching N-Linked Glycan Structures in LC-MS/MS Data Morten Rasmussen,
Morten Thaysen-Andersen, Tina Nielsen, Peter Hojrup:
Glycobiology 11/2009; 19(11):1306-1306.